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Compound-Protein interaction
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GENERAL DESCRIPTION:
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This dictionary contains all the sentences extracted from PubMed titles and abstracts that were published before July 2019, and contain at least one compound-protein pair and functional relationship of each pair using the all-path-graph kernel and shallow liguistic kernel. 

CONTENTS:
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1. CPI-DS.xml:
   The benchmark dataset. It consists of 2,613 sentences and 5,562 compound-protein pairs are annotated manually.

2. output.apg.zip :
   The functional relationship of compund-protein pairs by applying all-path-grapgh kernel (APG-kernel).

3. output.sl.zip :
   The functional relationship of compund-protein pairs by applying shallow ligusitic kernel (SL-kernel).

4. output.mv.zip :
   The functional relationship of compund-protein pairs by combining the prediction of both kernels using majority voting.

5. pairOccurrences.zip:
   The times of occurrences of each pair in terms of functional and non-functional relationships(based on the output.mv.zip).

6. whitelist_verbs.txt:
   Interaction verbs List. These verbs have been defined in the publication of the web service prolific (Senger and Grüning et al., 2012. Mining and evaluation of molecular relationships in literature. Bioinformatics).